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Regulatory Genomics [electronic resource] :RECOMB 2004 International Workshop, RRG 2004, San Diego, Ca, USA, March 26-27, 2004, Revised Selected Papers / edited by Eleazar Eskin, Christopher Workman.

by Eskin, Eleazar [editor.]; Workman, Christopher [editor.]; SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Computer Science: 3318Publisher: Berlin, Heidelberg : Springer Berlin Heidelberg, 2005.Description: VII, 115 p. Also available online. online resource.ISBN: 9783540322801.Subject(s): Computer science | Data structures (Computer science) | Computer software | Computational complexity | Database management | Bioinformatics | Biology -- Data processing | Computer Science | Algorithm Analysis and Problem Complexity | Discrete Mathematics in Computer Science | Data Structures | Database Management | Bioinformatics | Computer Appl. in Life SciencesDDC classification: 005.1 Online resources: Click here to access online
Contents:
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response -- Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome -- Fishing for Proteins in the Pacific Northwest -- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information -- Application of Kernel Method to Reveal Subtypes of TF Binding Motifs -- Learning Regulatory Network Models that Represent Regulator States and Roles -- Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs -- Parameter Landscape Analysis for Common Motif Discovery Programs -- Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data -- Modeling and Analysis of Heterogeneous Regulation in Biological Networks.
In: Springer eBooksSummary: This book constitutes the thoroughly refereed post-proceedings of the RECOMB 2004 Satellite Workshop on Regulatory Genomics, RRG 2004, held in San Diego, CA, USA in March 2004. The 10 revised full papers presented were carefully reviewed and improved for inclusion in the book. The papers address a broad variety of aspects of regulatory genomics including classification, functional module detection, proteonomics, sampling, kernel methods, TF binding motifs, gene expression data analysis, regulatory network model learning, RNA regulatory sequence motifs, DNA regulatory sequence motifs, parameter landscape analysis, and biological network regulation.
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Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response -- Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome -- Fishing for Proteins in the Pacific Northwest -- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information -- Application of Kernel Method to Reveal Subtypes of TF Binding Motifs -- Learning Regulatory Network Models that Represent Regulator States and Roles -- Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs -- Parameter Landscape Analysis for Common Motif Discovery Programs -- Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data -- Modeling and Analysis of Heterogeneous Regulation in Biological Networks.

This book constitutes the thoroughly refereed post-proceedings of the RECOMB 2004 Satellite Workshop on Regulatory Genomics, RRG 2004, held in San Diego, CA, USA in March 2004. The 10 revised full papers presented were carefully reviewed and improved for inclusion in the book. The papers address a broad variety of aspects of regulatory genomics including classification, functional module detection, proteonomics, sampling, kernel methods, TF binding motifs, gene expression data analysis, regulatory network model learning, RNA regulatory sequence motifs, DNA regulatory sequence motifs, parameter landscape analysis, and biological network regulation.

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